Sophie Shaw. BSc (Hons), AHEA
Graduate School Skills Workshops
March 2014: | Applying for Postdoctoral FundingWorkshop covering how to find out what post doctoral funding is available and the key points that should be made in a grant application. |
12th December 2013: | Preparing for your vivaBrief workshop detailing the ins and outs for the viva voce examination and the best way to prepare for this. |
31st October 2013: | How to Plan and Write Your ThesisShort workshop detailing the key points in the most effective ways to both plan and write your thesis. |
23rd October 2013: | Commerical Awareness (webinar)Webinar covering details of what commercial awareness is and how to research this for companies during the job application process. |
22nd October 2013: | Career Planning for PGRsBrief workshop detailing the steps needed in career planning both within and outside of academia. |
September 2012: | RNA Seq WorkshopFour sessions covering basics in RNA sequencing data using a Linux platform. Tasks including remapping reads to a reference genome, differential expression analysis, visualisation, clustering and plotting of results using R, and identification of introns and splice variants. |
June 2012: | Phylogenetics WorkshopTwo sessions covering the steps required to construct phylogenetic trees using protein sequences. Introduction to software including ClustalW, GBlocks, ModelGenerator, PhyML and TreeDyn. |
May 2012: | Short Read Genomics WorkshopSix sessions covering basics in short read genomics using a Linux platform. Tasks including remapping to a reference genome, identifying SNPs and INDELs, assembly of unmapped reads, de novo genome assembly, and comparison of SNPs and pfam domains from various strains. |
March 2012: | Programming Workshop - Introduction to Unix and PerlWorkshop teaching basic programming skills in Unix and Perl. This was all carried out via the Amazon EC2 virtual workspace. |
17th November 2011: | Publishing Your Research in JournalsSession covering the entire publication process from choosing a journal, to structuring the paper, to the submission process. |
20th June 2011: | Introduction to Electronic JournalsBasic introduction to accessing electronic journals online. |
26th May 2011: | Efficient ReadingShort session covering skills to improve speed of reading, note taking and information retention. |
February 2011: | Advanced SPSSFour sessions which covered various statistical concepts including frequency analysis and regression, with a demonstration on how to implicate these techniques using SPSS. |
28th January 2011: | Making the Most of Your SupervisorA workshop with information on how to manage your relationship with your supervisor and how to make the most out of their guidance on your research. |
18th January 2011: | Generic Introduction to SPSSAn afternoon course covering the basics of statistics, data input into SPSS and graphical representation of this data. |
10th December 2010: | Introduction to EndnoteAn overview of the uses of the referencing software Endnote. |
2nd December 2010: | Avoiding PhD Pitfalls - A Guide to Academic HonestyA short session covering academic honesty and plagiarism at a postgraduate level. |
11th November 2010: | Researching Online: Getting The Most From Science ResourcesInteractive session that covered effective search techniques, databases and ways to keep up-to-date with publications. |
29th October 2010: | Tackling a PhD Literature ReviewThis session covered the basics for producing a successful literature review, from planning, reading and note taking to the final write up. The use of a light-hearted example was used throughout to demonstrate the ideas. |
7th October 2010: | SmartStart PhD InductionA one day session covering many aspects of a PhD including time management, effective planning, thesis writing and networking. |
Workshop
January 2014: | Workshop on Genomics 2014 Cesky KrumlovInstructor for the 2014 Workshop on Genomics held in Cesky Krumlov. This role entailed travelling out to the workshop five days early to prepare and test workshop materials. Followed by two weeks of assisting in genomics laboratories covering various topics including Unix, short read genomics, assembly methods, RAD sequencing, transcriptomics, metagenomics and Python scripting. |
Conferences/Symposiums
March 2013: | British Yeast Group Meeting - Nottingham 2013Poster presentation describing the computational analysis of allelic expression imbalance under different growth conditions. |
April 2012: | 11th ASM Conference on Candida and Candidiasis - San Francisco 2012Poster presentation summarising the effect of differential allele expression on the phenotypic characteristics of the VPS1 gene. Travel grant awarded by the BSMM to enable me to attend this conference. |
September 2011: | British Mycological Society Annual Scientific Meeting - Exeter 2011Poster presentation summarising the effect of differential allele expression on the phenotypic characteristics of the VPS1 gene. |
18th May 2011: | Southwest UK RNA Club Annual Meeting - Exeter 2011A short presentation of RNA-sequencing data, the subsequent bioinformatic analysis of this and the initial findings of phenotypic analysis of heterozygous knockout mutants. |
April 2011: | British Society for Medical Mycology Annual Scientifc Meeting - Glasgow 2011Presentation of poster summarising the findings from bioinformatic analysis of RNA-sequencing data. |
Training
14th October 2010: | Basic Fire Safety |
6th October 2010: | Biosciences Health and Safety |
Professional Meetings
7th June 2013: | Exeter Sequencing Service Day25 minute presentation detailing my research, specifically the bioinformatic analysis of allelic expression imbalance. |
Externally Provided Workshop
14th November 2013: | Software Carpentry WorkshopTwo day workshop held by Software Carpentry. Topics covered included Python - basics, regular expression and unit testing, R, and version control using Git. |